Allen Institute for Neural Dynamics
Popular repositories Loading
-
aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
-
aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
-
openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
-
aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
-
supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
-
ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- aind-ephys-hybrid-benchmark Public
Pipeline to benchmark and compare spike sorting strategies with hybrid recordings
AllenNeuralDynamics/aind-ephys-hybrid-benchmark’s past year of commit activity - neuron-fragment-extractor Public
FragmentExtractor is a Python tool for generate data to train machine learning models that correct split and merge errors in neuron segmentations.
AllenNeuralDynamics/neuron-fragment-extractor’s past year of commit activity - aind-vr-foraging-primary-data-nwb-packaging Public
Capsule that packages primary data for VR Foraging task using data contract
AllenNeuralDynamics/aind-vr-foraging-primary-data-nwb-packaging’s past year of commit activity - aind-ophys-nwb Public
Write NWB files for data generated with two-photon ophys pipelines (currently multiplane only)
AllenNeuralDynamics/aind-ophys-nwb’s past year of commit activity - np-notebooks-launcher Public
A GUI tool for launching JupyterLab with a filtered, pre-configured version of a Jupyter notebook. Designed for experiment workflows that use the same notebook across different experiment types (e.g. ephys, hab, training).
AllenNeuralDynamics/np-notebooks-launcher’s past year of commit activity