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@Integrative-Transcriptomics

Integrative-Transcriptomics

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  1. MUSIAL MUSIAL Public

    Generate comprehensive statistics and alignments, and assess variability at the genome, gene and protein levels, based on VCF files produced from prokaryotic sources.

    Java 5 1

Repositories

Showing 10 of 56 repositories
  • GO-Compass Public

    Visual Navigation of Multiple Lists of GO terms

    Integrative-Transcriptomics/GO-Compass’s past year of commit activity
    JavaScript 4 0 6 7 Updated Mar 30, 2026
  • PhageExpressionAtlas Public

    PhageExpressionAtlas is a web application for interactive exploration of phage infections on the transcriptional level based on dual RNA-seq data.

    Integrative-Transcriptomics/PhageExpressionAtlas’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 27, 2026
  • phage_host_dual_transcriptomics Public
    Integrative-Transcriptomics/phage_host_dual_transcriptomics’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 27, 2026
  • TrepoGen-nextstrain Public

    Nextstrain TrepoGen is a reproducible Nextstrain workflow for tracking bacterial diversity at both genome- and gene-level.

    Integrative-Transcriptomics/TrepoGen-nextstrain’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 26, 2026
  • TrepoGen-auspice Public Forked from nextstrain/auspice

    Custom Auspice fork for visualizing global Treponema pallidum data with a focus on outer membrane proteins.

    Integrative-Transcriptomics/TrepoGen-auspice’s past year of commit activity
    JavaScript 0 AGPL-3.0 172 0 0 Updated Mar 26, 2026
  • TSSpredator-Web Public

    TSSpredator-Web allows a web-based TSS predicition for prokaryotic data.

    Integrative-Transcriptomics/TSSpredator-Web’s past year of commit activity
    JavaScript 1 GPL-3.0 0 0 0 Updated Mar 18, 2026
  • PTMVision-Student Public Forked from Integrative-Transcriptomics/PTMVision

    Web application for the interactive visualization and exploration of post-translational modifications of proteins from open and closed search software.

    Integrative-Transcriptomics/PTMVision-Student’s past year of commit activity
    HTML 1 GPL-3.0 1 22 0 Updated Mar 3, 2026
  • TrepoGen-auspice-docker Public

    Maintains the Dockerfile to run the custom TrepoGen auspice instance with the latest dataset.

    Integrative-Transcriptomics/TrepoGen-auspice-docker’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Feb 24, 2026
  • PTMVision Public

    Web application for the interactive visualization and exploration of post-translational modifications of proteins from open and closed search software.

    Integrative-Transcriptomics/PTMVision’s past year of commit activity
    HTML 6 GPL-3.0 1 0 0 Updated Feb 23, 2026
  • Evidente2.0 Public
    Integrative-Transcriptomics/Evidente2.0’s past year of commit activity
    Go 1 1 27 1 Updated Feb 10, 2026
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