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1 change: 1 addition & 0 deletions docs/api/datasets.rst
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Expand Up @@ -238,6 +238,7 @@ Available Datasets
datasets/pyhealth.datasets.BMDHSDataset
datasets/pyhealth.datasets.COVID19CXRDataset
datasets/pyhealth.datasets.ChestXray14Dataset
datasets/pyhealth.datasets.CheXpertPlusDataset
datasets/pyhealth.datasets.PhysioNetDeIDDataset
datasets/pyhealth.datasets.TUABDataset
datasets/pyhealth.datasets.TUEVDataset
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12 changes: 12 additions & 0 deletions docs/api/datasets/pyhealth.datasets.CheXpertPlusDataset.rst
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pyhealth.datasets.CheXpertPlusDataset
====================================

CheXpert Plus dataset wrapper for report-driven chest X-ray knowledge graph
extraction. For more information see the dataset page
`here <https://stanfordaimi.azurewebsites.net/datasets/5158c524-d3ab-4e02-96e9-6ee9efc110a1>`_
and paper `here <https://arxiv.org/abs/2405.19111>`_.

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1 change: 1 addition & 0 deletions docs/api/models.rst
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Expand Up @@ -177,6 +177,7 @@ API Reference
models/pyhealth.models.GNN
models/pyhealth.models.Transformer
models/pyhealth.models.TransformersModel
models/pyhealth.models.ReXKGModel
models/pyhealth.models.TransformerDeID
models/pyhealth.models.RETAIN
models/pyhealth.models.GAMENet
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10 changes: 10 additions & 0 deletions docs/api/models/pyhealth.models.ReXKGModel.rst
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pyhealth.models.ReXKGModel
===========================

ReXKG model for span-based radiology NER, pairwise relation extraction,
and downstream knowledge graph construction.

.. autoclass:: pyhealth.models.ReXKGModel
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1 change: 1 addition & 0 deletions docs/api/tasks.rst
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Expand Up @@ -226,6 +226,7 @@ Available Tasks
ChestX-ray14 Binary Classification <tasks/pyhealth.tasks.ChestXray14BinaryClassification>
De-Identification NER <tasks/pyhealth.tasks.DeIDNERTask>
ChestX-ray14 Multilabel Classification <tasks/pyhealth.tasks.ChestXray14MultilabelClassification>
Radiology KG Extraction <tasks/pyhealth.tasks.RadiologyKGExtractionTask>
Variant Classification (ClinVar) <tasks/pyhealth.tasks.VariantClassificationClinVar>
Mutation Pathogenicity (COSMIC) <tasks/pyhealth.tasks.MutationPathogenicityPrediction>
Cancer Survival Prediction (TCGA) <tasks/pyhealth.tasks.CancerSurvivalPrediction>
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9 changes: 9 additions & 0 deletions docs/api/tasks/pyhealth.tasks.RadiologyKGExtractionTask.rst
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pyhealth.tasks.RadiologyKGExtractionTask
========================================

Task for ReXKG-style entity and relation extraction from radiology reports.

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2 changes: 2 additions & 0 deletions docs/tutorials.rst
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Expand Up @@ -218,6 +218,8 @@ These examples are located in ``examples/cxr/``.
- VAE for chest X-ray image generation
* - ``cxr/ChestXray-image-generation-GAN.ipynb``
- GAN for chest X-ray image generation (notebook)
* - ``cxr/chexpert_plus_rexkg.ipynb``
- Radiology KG extraction with CheXpert Plus (ReXKG pipeline, notebook)

Interpretability
----------------
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